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CD4+ T cell reconstitution, T cell activation, and memory T cell subset composition in blood and gut of HIV-negative and ART-suppressed HIV-positive patients: implications for HIV persistence in the gut

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Journal of the International AIDS Society201013 (Suppl 3) :O1

  • Published:


  • Effector Memory
  • Cell Subset
  • Lymphoid Aggregate
  • Cell Reconstitution
  • Chronic Virus


HIV DNA and RNA levels in the gut exceed those in the blood up to 10-fold. The ileum and rectum differ in HIV levels and responses to intensification, suggesting that mechanisms of persistence may vary between sites. HIV persistence could be impacted by T cell activation, absolute CD4 levels, or composition of memory T cell subsets.


Mucosal biopsies were obtained from the ileums and rectums of eight HIV-negative controls and 10 ART-suppressed HIV-positive patients. Isolated cells were analyzed for T cell composition (CD3, CD4, CD8), activation (CD38, HLA-DR), and memory subpopulations (CD45RO, CCR7, CCR5, CD27) using flow cytometry. CD4 numbers were also measured by immunohistochemistry. In two patients, HIV DNA was measured in sorted subpopulations of memory CD4+ T cells.


CD4 reconstitution appears to reach normal levels in the rectum (mean CD4%: HIV positive 51.9%; HIV negative 48.7%), but not the ileum (HIV positive 29.6%; HIV negative 44.2%). Ileal CD4 numbers appear normal in the lymphoid aggregates, but not the lamina propria. In both the ileum and rectum, T cell activation remains higher than in HIV-negative controls (Table 1)
Table 1

Mean T cell activation, by site and HIV status

Mean activation

PBMC* HIV negative

PBMC HIV positive

Ileum HIV negative

Ileum HIV positive

Rectum HIV negative

Rectum HIV positive

CD38+HLA-DR+ as % of CD4+T







CD38+HLA-DR+ as % of CD8+T







* PBMC: peripheral blood mononuclear cells

In three HIV-positive patients, the ileum harboured more effector memory (EM) CD4+ T cells (mean 41.6% of CD4+ T cells) than the PBMC (15.4%), but similar numbers of transitional memory (TM) CD4+ T cells (ileum: 11.2%; PBMC: 14.0%). HIV DNA concentrations in ileal EM (1 copy/2100 cells) were 25-fold higher than in blood EM (1 copy/54,000 cells).


T cell reconstitution and activation differ between gut sites. The higher concentration of HIV DNA in the gut is not due to increased TM cell%, but could reflect differences in the rate of infection of memory subtypes. The abnormal immune activation and lack of CD4 reconstitution in the ileum could reflect ongoing replication or chronic virus production.



PLUS Study Group

Authors’ Affiliations

San Francisco VA Medical Center, San Francisco, USA
University of California San Francisco, San Francisco, USA
San Francisco General Hospital, San Francisco, USA
University of Minnesota, Minneapolis, USA


© Yukl et al; licensee BioMed Central Ltd. 2010

This article is published under license to BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.